From tpcollig at gmail.com  Thu Jan  4 08:52:28 2007
From: tpcollig at gmail.com (Tijmen)
Date: Thu, 4 Jan 2007 15:52:28 +0100
Subject: [Users] linking error Wave Toy Demo
Message-ID: <3fe6b0f70701040652j5ab76e2fxdfb15a34e4cdda3c@mail.gmail.com>

Hello,

I am trying to compile the MPI Wave Toy Demo from
http://www.cactuscode.org/WaveToyDemo/ on a cluster of workstations
that has MPI/LAM installed. Everything compiles perfectly, but when
its linked, I get the following error:

Creating cactus_WaveDemo in /home/nw/tpcollig/Work/Cactus/exe from
CactusBase/Boundary CactusBase/CartGrid3D CactusBase/CoordBase
CactusConnect/HTTPD CactusConnect/HTTPDExtra CactusWave/IDScalarWaveC
CactusBase/IOASCII CactusBase/IOBasic CactusIO/IOJpeg
CactusBase/IOUtil CactusPUGHIO/IsoSurfacer CactusBase/LocalReduce
CactusPUGH/PUGH CactusPUGH/PUGHReduce CactusPUGH/PUGHSlab
CactusConnect/Socket CactusBase/SymBase CactusBase/Time
CactusWave/WaveBinarySource CactusWave/WaveToyC CactusExternal/jpeg6b
/opt/lam-mpibase/lib/liblam.a(ltdl.o)(.text+0x3b5): In function `sys_dl_open':
: undefined reference to `dlopen'
/opt/lam-mpibase/lib/liblam.a(ltdl.o)(.text+0x3d5): In function `sys_dl_open':
: undefined reference to `dlerror'

<snipped some more similar errors>

collect2: ld returned 1 exit status

My ~/.cactus/config file contains:

MPI = LAM
LAM_DIR = /opt/lam-mpibase

During configuration, I get the messages

Configuring with MPI
  LAM selected
  Using "/opt/lam-mpibase/include" as LAM include path
  Using "/opt/lam-mpibase/lib" as LAM library path

which are the correct paths.

I use gcc version 3.3.6. A google search suggests that is has
something to do with libdl, but I have no idea why this does not work.
If I don't use MPI the applications compiles/links/runs perfectly.
Also, I can compile and run normal MPI programs without a hitch.

Any ideas anyone?

Kind regards,

From tradke at aei.mpg.de  Thu Jan  4 09:15:12 2007
From: tradke at aei.mpg.de (Thomas Radke)
Date: Thu, 04 Jan 2007 16:15:12 +0100
Subject: [Users] linking error Wave Toy Demo
In-Reply-To: <3fe6b0f70701040652j5ab76e2fxdfb15a34e4cdda3c@mail.gmail.com>
References: <3fe6b0f70701040652j5ab76e2fxdfb15a34e4cdda3c@mail.gmail.com>
Message-ID: <459D1A00.4020002@aei.mpg.de>

Tijmen wrote:
> Hello,
> 
> I am trying to compile the MPI Wave Toy Demo from
> http://www.cactuscode.org/WaveToyDemo/ on a cluster of workstations
> that has MPI/LAM installed. Everything compiles perfectly, but when
> its linked, I get the following error:
> 
> Creating cactus_WaveDemo in /home/nw/tpcollig/Work/Cactus/exe from
> CactusBase/Boundary CactusBase/CartGrid3D CactusBase/CoordBase
> CactusConnect/HTTPD CactusConnect/HTTPDExtra CactusWave/IDScalarWaveC
> CactusBase/IOASCII CactusBase/IOBasic CactusIO/IOJpeg
> CactusBase/IOUtil CactusPUGHIO/IsoSurfacer CactusBase/LocalReduce
> CactusPUGH/PUGH CactusPUGH/PUGHReduce CactusPUGH/PUGHSlab
> CactusConnect/Socket CactusBase/SymBase CactusBase/Time
> CactusWave/WaveBinarySource CactusWave/WaveToyC CactusExternal/jpeg6b
> /opt/lam-mpibase/lib/liblam.a(ltdl.o)(.text+0x3b5): In function `sys_dl_open':
> : undefined reference to `dlopen'
> /opt/lam-mpibase/lib/liblam.a(ltdl.o)(.text+0x3d5): In function `sys_dl_open':
> : undefined reference to `dlerror'
> 
> <snipped some more similar errors>
> 
> collect2: ld returned 1 exit status
> 
> My ~/.cactus/config file contains:
> 
> MPI = LAM
> LAM_DIR = /opt/lam-mpibase

It's your LAM MPI library which itself requires libdl.

Cactus tries to determine what other libraries LAM depends on by looking 
into $LAM_DIR/include/lam_config.h and checking for the setting of 
WRAPPER_EXTRA_LIBS. If the libdl library isn't mentioned there, Cactus 
doesn't include it in the liblist.

You can either fix the LAM config header by adding '-ldl' to 
WRAPPER_EXTRA_LIBS or - if you aren't allowed to modify your LAM 
installation - tell Cactus explicitely your MPI settings, eg.

   MPI          = CUSTOM
   MPI_LIB_DIRS = $LAM_DIR/lib
   MPI_INC_DIRS = $LAM_DIR/include
   MPI_LIBS     = 'mpi lam pthread util dl'

-- 
Cheers, Thomas.

From tpcollig at gmail.com  Thu Jan  4 10:04:00 2007
From: tpcollig at gmail.com (Tijmen)
Date: Thu, 4 Jan 2007 17:04:00 +0100
Subject: [Users] linking error Wave Toy Demo
In-Reply-To: <459D1A00.4020002@aei.mpg.de>
References: <3fe6b0f70701040652j5ab76e2fxdfb15a34e4cdda3c@mail.gmail.com>
	<459D1A00.4020002@aei.mpg.de>
Message-ID: <3fe6b0f70701040804k35fa5aa4o46610c12bcf3c564@mail.gmail.com>

Thank you! Compiling and linking works perfectly now. For future
generations, this is the exact config file I used:

MPI = CUSTOM
MPI_LIBS     = mpi lam pthread util dl
MPI_LIB_DIRS = /opt/lam-mpibase/lib
MPI_INC_DIRS = /opt/lam-mpibase/include

(Note the missing apostrophes around the mpi libs).

On 1/4/07, Thomas Radke <tradke at aei.mpg.de> wrote:
> Tijmen wrote:
> > Hello,
> >
> > I am trying to compile the MPI Wave Toy Demo from
> > http://www.cactuscode.org/WaveToyDemo/ on a cluster of workstations
> > that has MPI/LAM installed. Everything compiles perfectly, but when
> > its linked, I get the following error:
> >
> > Creating cactus_WaveDemo in /home/nw/tpcollig/Work/Cactus/exe from
> > CactusBase/Boundary CactusBase/CartGrid3D CactusBase/CoordBase
> > CactusConnect/HTTPD CactusConnect/HTTPDExtra CactusWave/IDScalarWaveC
> > CactusBase/IOASCII CactusBase/IOBasic CactusIO/IOJpeg
> > CactusBase/IOUtil CactusPUGHIO/IsoSurfacer CactusBase/LocalReduce
> > CactusPUGH/PUGH CactusPUGH/PUGHReduce CactusPUGH/PUGHSlab
> > CactusConnect/Socket CactusBase/SymBase CactusBase/Time
> > CactusWave/WaveBinarySource CactusWave/WaveToyC CactusExternal/jpeg6b
> > /opt/lam-mpibase/lib/liblam.a(ltdl.o)(.text+0x3b5): In function `sys_dl_open':
> > : undefined reference to `dlopen'
> > /opt/lam-mpibase/lib/liblam.a(ltdl.o)(.text+0x3d5): In function `sys_dl_open':
> > : undefined reference to `dlerror'
> >
> > <snipped some more similar errors>
> >
> > collect2: ld returned 1 exit status
> >
> > My ~/.cactus/config file contains:
> >
> > MPI = LAM
> > LAM_DIR = /opt/lam-mpibase
>
> It's your LAM MPI library which itself requires libdl.
>
> Cactus tries to determine what other libraries LAM depends on by looking
> into $LAM_DIR/include/lam_config.h and checking for the setting of
> WRAPPER_EXTRA_LIBS. If the libdl library isn't mentioned there, Cactus
> doesn't include it in the liblist.
>
> You can either fix the LAM config header by adding '-ldl' to
> WRAPPER_EXTRA_LIBS or - if you aren't allowed to modify your LAM
> installation - tell Cactus explicitely your MPI settings, eg.
>
>    MPI          = CUSTOM
>    MPI_LIB_DIRS = $LAM_DIR/lib
>    MPI_INC_DIRS = $LAM_DIR/include
>    MPI_LIBS     = 'mpi lam pthread util dl'
>
> --
> Cheers, Thomas.
> _______________________________________________
> Users mailing list
> Users at cactuscode.org
> http://www.cactuscode.org/mailman/listinfo/users
>

From mehdi.alishahi at gmail.com  Mon Jan  8 10:11:05 2007
From: mehdi.alishahi at gmail.com (Mehdi Sheikhalishahi)
Date: Mon, 8 Jan 2007 19:41:05 +0330
Subject: [Users] Help me to compile Cactus
Message-ID: <8c911f390701080811q48a04a7fy3991710cbb29c926@mail.gmail.com>

Hi,
 I want to compile Cactus but I got errors, I remove thorns that have
problems but still errors exists. I read manual But I cannot compile
it. Please help me ?
Please send me a step by step document.

-- 
Best Regards,
S.Mehdi Sheikhalishahi,
Bye.

From yye00 at cct.lsu.edu  Mon Jan  8 10:31:34 2007
From: yye00 at cct.lsu.edu (Yaakoub El-Khamra)
Date: Mon, 08 Jan 2007 10:31:34 -0600
Subject: [Users] Help me to compile Cactus
In-Reply-To: <8c911f390701080811q48a04a7fy3991710cbb29c926@mail.gmail.com>
References: <8c911f390701080811q48a04a7fy3991710cbb29c926@mail.gmail.com>
Message-ID: <1168273894.18513.8.camel@fmws01.cct.lsu.edu>


Hi Mehdi
To start, can you please try to compile the simplest possible
configuration with a typical procedure that most people use:

-> Checkout Cactus, make sure you get the CactusExamples arrangement
-> cd Cactus  #To get into the cactus directory
-> gmake testHelloWorld # to start building a cactus configuration with
the name testHelloWorld
Cactus will now start the configuration process. If you get errors here
please let us know.

Once the configuration is done and there are no errors, continue as
follows:
->gmake testHelloWorld # now Cactus will compile a list of thorns into a
thornlist and ask you if you want to edit this thornlist, say yes. Edit
the thornlist so that it only contains the following thorn:
"CactusExamples/HelloWorld" and exit the editor. Now Cactus will compile
your configuration and produce an executable.

Please let us know if you run into errors or problems while following
these steps.

Cheers
Yaakoub



On Mon, 2007-01-08 at 19:41 +0330, Mehdi Sheikhalishahi wrote:
> Hi,
>  I want to compile Cactus but I got errors, I remove thorns that have
> problems but still errors exists. I read manual But I cannot compile
> it. Please help me ?
> Please send me a step by step document.
> 


From dprideout at gmail.com  Mon Jan  8 10:34:05 2007
From: dprideout at gmail.com (David Rideout)
Date: Mon, 8 Jan 2007 16:34:05 +0000
Subject: [Users] Help me to compile Cactus
In-Reply-To: <8c911f390701080811q48a04a7fy3991710cbb29c926@mail.gmail.com>
References: <8c911f390701080811q48a04a7fy3991710cbb29c926@mail.gmail.com>
Message-ID: <1ce81abb0701080834w51a5de52n2d40b4a3487a6c36@mail.gmail.com>

You'll have to post your error messages.  And tell us what sort of
computer you are using (e.g. which operating system).

Regards,
David

On 1/8/07, Mehdi Sheikhalishahi <mehdi.alishahi at gmail.com> wrote:
> Hi,
>  I want to compile Cactus but I got errors, I remove thorns that have
> problems but still errors exists. I read manual But I cannot compile
> it. Please help me ?
> Please send me a step by step document.
>
> --
> Best Regards,
> S.Mehdi Sheikhalishahi,
> Bye.
> _______________________________________________
> Users mailing list
> Users at cactuscode.org
> http://www.cactuscode.org/mailman/listinfo/users
>

From goodale at cct.lsu.edu  Mon Jan  8 10:35:57 2007
From: goodale at cct.lsu.edu (Tom Goodale)
Date: Mon, 8 Jan 2007 16:35:57 +0000 (GMT)
Subject: [Users] Help me to compile Cactus
In-Reply-To: <8c911f390701080811q48a04a7fy3991710cbb29c926@mail.gmail.com>
References: <8c911f390701080811q48a04a7fy3991710cbb29c926@mail.gmail.com>
Message-ID: <Pine.LNX.4.64.0701081635420.15787@fandango.dyndns.org>

On Mon, 8 Jan 2007, Mehdi Sheikhalishahi wrote:

> I want to compile Cactus but I got errors, I remove thorns that have
> problems but still errors exists. I read manual But I cannot compile
> it. Please help me ?
> Please send me a step by step document.

Can you be more specific about the errors ?

From mehdi.alishahi at gmail.com  Mon Jan  8 11:09:28 2007
From: mehdi.alishahi at gmail.com (Mehdi Sheikhalishahi)
Date: Mon, 8 Jan 2007 20:39:28 +0330
Subject: [Users] Help me to compile Cactus
In-Reply-To: <1168273894.18513.8.camel@fmws01.cct.lsu.edu>
References: <8c911f390701080811q48a04a7fy3991710cbb29c926@mail.gmail.com>
	<1168273894.18513.8.camel@fmws01.cct.lsu.edu>
Message-ID: <8c911f390701080909l49841077qdbb49696fb5bcb39@mail.gmail.com>

Hi Yaakoub,
 I have no problem. Your procedures work correctly. The following are output.
[root at localhost Cactus]# make testHelloWorld
________________________________________________________________________
Cactus - version: 4.0.b16
Building configuration testHelloWorld
________________________________________________________________________
Checking status of thorn HelloWorld
________________________________________________________________________
________________________________________________________________________
Checking status of thorn Cactus
________________________________________________________________________
________________________________________________________________________
Checking status of thorn CactusBindings
________________________________________________________________________
________________________________________________________________________
All done !


On 1/8/07, Yaakoub El-Khamra <yye00 at cct.lsu.edu> wrote:
>
> Hi Mehdi
> To start, can you please try to compile the simplest possible
> configuration with a typical procedure that most people use:
>
> -> Checkout Cactus, make sure you get the CactusExamples arrangement
> -> cd Cactus  #To get into the cactus directory
> -> gmake testHelloWorld # to start building a cactus configuration with
> the name testHelloWorld
> Cactus will now start the configuration process. If you get errors here
> please let us know.
>
> Once the configuration is done and there are no errors, continue as
> follows:
> ->gmake testHelloWorld # now Cactus will compile a list of thorns into a
> thornlist and ask you if you want to edit this thornlist, say yes. Edit
> the thornlist so that it only contains the following thorn:
> "CactusExamples/HelloWorld" and exit the editor. Now Cactus will compile
> your configuration and produce an executable.
>
> Please let us know if you run into errors or problems while following
> these steps.
>
> Cheers
> Yaakoub
>
>
>
> On Mon, 2007-01-08 at 19:41 +0330, Mehdi Sheikhalishahi wrote:
> > Hi,
> >  I want to compile Cactus but I got errors, I remove thorns that have
> > problems but still errors exists. I read manual But I cannot compile
> > it. Please help me ?
> > Please send me a step by step document.
> >
>
> _______________________________________________
> Users mailing list
> Users at cactuscode.org
> http://www.cactuscode.org/mailman/listinfo/users
>


-- 
Best Regards,
S.Mehdi Sheikhalishahi,
Bye.

From mehdi.alishahi at gmail.com  Mon Jan  8 11:26:47 2007
From: mehdi.alishahi at gmail.com (Mehdi Sheikhalishahi)
Date: Mon, 8 Jan 2007 20:56:47 +0330
Subject: [Users] Help
Message-ID: <8c911f390701080926u5181101dk79dccc172acbe35@mail.gmail.com>

Hi,
 I want to compile Cactus will CFD thorns, But I got the following errors:
My OS is RedHat 9.
Can u please help me?
[root at localhost Cactus]# uname -a
Linux localhost.localdomain 2.4.20-8smp #1 SMP Thu Mar 13 17:45:54 EST
2003 i686 i686 i386 GNU/Linux
-------------------------------------
 I got the following error while compiling, Can you please help me?
CST error 1:
 -> Schedule error: Thorn CFDMesh - group cartspacings doesn't exist.

 Creating function bindings...

CST error 2:
 -> Include file Symmetry.h not found in CactusCFD/CFDMesh




------------------------------------------------------
There were 2 errors during execution of the CST
These must be corrected before compilation can proceed
------------------------------------------------------



------------------------------------------------------
Warnings were generated during execution of the CST
------------------------------------------------------


CST error 1:
 -> Schedule error: Thorn CFDMesh - group cartspacings doesn't exist.
   HINT: Check cartspacings really is in thorn CFDMesh. Groups from
other thorns need to be specified using <implementation>::cartspacings
and <implementation> must be inherited by your thorn.


CST error 2:
 -> Include file Symmetry.h not found in CactusCFD/CFDMesh


------------------------------------------------------

make[1]: *** [/root/CFDToolkit/Cactus/configs/mkk/config-data/make.thornlist]
Error 1
make: *** [mkk] Error 2
-- 
Best Regards,
S.Mehdi Sheikhalishahi,
Bye.

From yye00 at cct.lsu.edu  Mon Jan  8 12:58:40 2007
From: yye00 at cct.lsu.edu (Yaakoub El-Khamra)
Date: Mon, 08 Jan 2007 12:58:40 -0600
Subject: [Users] Help
In-Reply-To: <8c911f390701080926u5181101dk79dccc172acbe35@mail.gmail.com>
References: <8c911f390701080926u5181101dk79dccc172acbe35@mail.gmail.com>
Message-ID: <1168282720.3154.2.camel@fmws01.cct.lsu.edu>


Hi Mehdi
Please use the thornlist I provided you with on google chat to compile
the CFDToolkit. Some of the thorns are in heavy development at the
moment and are constantly changing so some of them will not work out of
the box.

Cheers
Yaakoub


NB Here is the thornlist again if you missed it:
CactusBase/Boundary                # boundary ( ) [ ] { }
CactusBase/CartGrid3D              # grid (coordbase) [ ] {driver}
CactusBase/CoordBase               # CoordBase ( ) [ ] { }
CactusBase/IOASCII                 # IOASCII ( ) [ ] {IO}
CactusBase/IOBasic                 # IOBasic (IO) [ ] {IO}
CactusBase/IOUtil                  # IO ( ) [ ] { }
CactusBase/LocalInterp             # LocalInterp ( ) [ ] { }
CactusBase/LocalReduce             # LocalReduce ( ) [ ] { }
CactusBase/SymBase                 # SymBase ( ) [ ] { }
CactusBase/Time                    # time ( ) [ ] {cactus}
CactusCFD/CFDBase                  # cfdbase (grid) [ ] { }
CactusCFD/CFDConvec                # cfdconvec (cfdbase) [ ] { }
CactusCFD/CFDDiffuse               # cfddiffuse (cfdbase) [ ] { }
CactusCFD/CFDDrivers               # CFDDriver ( ) [ ] { }
CactusCFD/CFDEvolvers              # cfdevolver
(cfdbase,grid,ellbase,cfddiffuse,cfdconvec) [ ] { }
CactusCFD/DrivenCavity             # CFDProblem (cfdbase,cfdevolver) [ ]
{ }
CactusCFD/PressurePoisson          # pressurepoisson (ellbase,boundary)
[ ] {ellbase}
CactusElliptic/EllBase             # ellbase ( ) [ ] { }
CactusPUGH/PUGH                    # Driver ( ) [ ] {cactus}
CactusPUGH/PUGHInterp              # Interp ( ) [ ] { }
CactusPUGH/PUGHReduce              # Reduce ( ) [ ] { }
CactusPUGH/PUGHSlab                # Hyperslab ( ) [ ] { }



On Mon, 2007-01-08 at 20:56 +0330, Mehdi Sheikhalishahi wrote:
> Hi,
>  I want to compile Cactus will CFD thorns, But I got the following errors:
> My OS is RedHat 9.
> Can u please help me?
> [root at localhost Cactus]# uname -a
> Linux localhost.localdomain 2.4.20-8smp #1 SMP Thu Mar 13 17:45:54 EST
> 2003 i686 i686 i386 GNU/Linux
> -------------------------------------
>  I got the following error while compiling, Can you please help me?
> CST error 1:
>  -> Schedule error: Thorn CFDMesh - group cartspacings doesn't exist.
> 
>  Creating function bindings...
> 
> CST error 2:
>  -> Include file Symmetry.h not found in CactusCFD/CFDMesh
> 
> 
> 
> 
> ------------------------------------------------------
> There were 2 errors during execution of the CST
> These must be corrected before compilation can proceed
> ------------------------------------------------------
> 
> 
> 
> ------------------------------------------------------
> Warnings were generated during execution of the CST
> ------------------------------------------------------
> 
> 
> CST error 1:
>  -> Schedule error: Thorn CFDMesh - group cartspacings doesn't exist.
>    HINT: Check cartspacings really is in thorn CFDMesh. Groups from
> other thorns need to be specified using <implementation>::cartspacings
> and <implementation> must be inherited by your thorn.
> 
> 
> CST error 2:
>  -> Include file Symmetry.h not found in CactusCFD/CFDMesh
> 
> 
> ------------------------------------------------------
> 
> make[1]: *** [/root/CFDToolkit/Cactus/configs/mkk/config-data/make.thornlist]
> Error 1
> make: *** [mkk] Error 2


From mehdi.alishahi at gmail.com  Tue Jan  9 04:22:50 2007
From: mehdi.alishahi at gmail.com (Mehdi Sheikhalishahi)
Date: Tue, 9 Jan 2007 13:52:50 +0330
Subject: [Users] Help
In-Reply-To: <1168282720.3154.2.camel@fmws01.cct.lsu.edu>
References: <8c911f390701080926u5181101dk79dccc172acbe35@mail.gmail.com>
	<1168282720.3154.2.camel@fmws01.cct.lsu.edu>
Message-ID: <8c911f390701090222s537906dfjcc708e4e4e5001c5@mail.gmail.com>

Hi,
 I thank from Yaakoub because of his help. I can compile Cactus for
CFD by list of thorns that Yaaakoub introduced to me.

On 1/8/07, Yaakoub El-Khamra <yye00 at cct.lsu.edu> wrote:
>
> Hi Mehdi
> Please use the thornlist I provided you with on google chat to compile
> the CFDToolkit. Some of the thorns are in heavy development at the
> moment and are constantly changing so some of them will not work out of
> the box.
>
> Cheers
> Yaakoub
>
>
> NB Here is the thornlist again if you missed it:
> CactusBase/Boundary                # boundary ( ) [ ] { }
> CactusBase/CartGrid3D              # grid (coordbase) [ ] {driver}
> CactusBase/CoordBase               # CoordBase ( ) [ ] { }
> CactusBase/IOASCII                 # IOASCII ( ) [ ] {IO}
> CactusBase/IOBasic                 # IOBasic (IO) [ ] {IO}
> CactusBase/IOUtil                  # IO ( ) [ ] { }
> CactusBase/LocalInterp             # LocalInterp ( ) [ ] { }
> CactusBase/LocalReduce             # LocalReduce ( ) [ ] { }
> CactusBase/SymBase                 # SymBase ( ) [ ] { }
> CactusBase/Time                    # time ( ) [ ] {cactus}
> CactusCFD/CFDBase                  # cfdbase (grid) [ ] { }
> CactusCFD/CFDConvec                # cfdconvec (cfdbase) [ ] { }
> CactusCFD/CFDDiffuse               # cfddiffuse (cfdbase) [ ] { }
> CactusCFD/CFDDrivers               # CFDDriver ( ) [ ] { }
> CactusCFD/CFDEvolvers              # cfdevolver
> (cfdbase,grid,ellbase,cfddiffuse,cfdconvec) [ ] { }
> CactusCFD/DrivenCavity             # CFDProblem (cfdbase,cfdevolver) [ ]
> { }
> CactusCFD/PressurePoisson          # pressurepoisson (ellbase,boundary)
> [ ] {ellbase}
> CactusElliptic/EllBase             # ellbase ( ) [ ] { }
> CactusPUGH/PUGH                    # Driver ( ) [ ] {cactus}
> CactusPUGH/PUGHInterp              # Interp ( ) [ ] { }
> CactusPUGH/PUGHReduce              # Reduce ( ) [ ] { }
> CactusPUGH/PUGHSlab                # Hyperslab ( ) [ ] { }
>
>
>
> On Mon, 2007-01-08 at 20:56 +0330, Mehdi Sheikhalishahi wrote:
> > Hi,
> >  I want to compile Cactus will CFD thorns, But I got the following errors:
> > My OS is RedHat 9.
> > Can u please help me?
> > [root at localhost Cactus]# uname -a
> > Linux localhost.localdomain 2.4.20-8smp #1 SMP Thu Mar 13 17:45:54 EST
> > 2003 i686 i686 i386 GNU/Linux
> > -------------------------------------
> >  I got the following error while compiling, Can you please help me?
> > CST error 1:
> >  -> Schedule error: Thorn CFDMesh - group cartspacings doesn't exist.
> >
> >  Creating function bindings...
> >
> > CST error 2:
> >  -> Include file Symmetry.h not found in CactusCFD/CFDMesh
> >
> >
> >
> >
> > ------------------------------------------------------
> > There were 2 errors during execution of the CST
> > These must be corrected before compilation can proceed
> > ------------------------------------------------------
> >
> >
> >
> > ------------------------------------------------------
> > Warnings were generated during execution of the CST
> > ------------------------------------------------------
> >
> >
> > CST error 1:
> >  -> Schedule error: Thorn CFDMesh - group cartspacings doesn't exist.
> >    HINT: Check cartspacings really is in thorn CFDMesh. Groups from
> > other thorns need to be specified using <implementation>::cartspacings
> > and <implementation> must be inherited by your thorn.
> >
> >
> > CST error 2:
> >  -> Include file Symmetry.h not found in CactusCFD/CFDMesh
> >
> >
> > ------------------------------------------------------
> >
> > make[1]: *** [/root/CFDToolkit/Cactus/configs/mkk/config-data/make.thornlist]
> > Error 1
> > make: *** [mkk] Error 2
>
> _______________________________________________
> Users mailing list
> Users at cactuscode.org
> http://www.cactuscode.org/mailman/listinfo/users
>


-- 
Best Regards,
S.Mehdi Sheikhalishahi,
Bye.

From mehdi.alishahi at gmail.com  Wed Jan 10 00:40:29 2007
From: mehdi.alishahi at gmail.com (Mehdi Sheikhalishahi)
Date: Wed, 10 Jan 2007 10:10:29 +0330
Subject: [Users] How to run CFDExamples samples
Message-ID: <8c911f390701092240u1a7cbb1dn4ba57773545a7917@mail.gmail.com>

Hi,
 I compile/build Cactus with the following thorns successfully. Now I
want to test Inflow thorn but I got the following errors:
# ./exe/cactus_test1 ./arrangements/CFDExamples/AlphaCFD/par/InflowAlphaCCT.par
--------------------------------------------------------------------------------

       10
  1   0101       ************************
  01  1010 10      The Cactus Code V4.0
 1010 1101 011      www.cactuscode.org
  1001 100101    ************************
    00010101
     100011     (c) Copyright The Authors
      0100      GNU Licensed. No Warranty
      0101

--------------------------------------------------------------------------------

Cactus version:    4.0.b16
Compile date:      Jan 05 2007 (09:19:08)
Run date:          Jan 05 2007 (22:27:37+0330)
Run host:          cse24
Working directory: /root/CFDToolkit/Cactus
Executable:        ./exe/cactus_test1
Parameter file:    ./arrangements/CFDExamples/AlphaCFD/par/InflowAlphaCCT.par
--------------------------------------------------------------------------------

Activating thorn Cactus...Success -> active implementation Cactus
Activation requested for
--->pressurepoisson cfdevolvers localreduce time boundary pugh
pughreduce pughslab CartGrid3D CoordBase SymBase ioutil ioascii
iobasic cfdbase ellbase inflow httpd httpdextra socket iojpeg alphaCFD
CFDConvec CFDDiffuse<---
Activating thorn alphaCFD...Success -> active implementation alphacct
Activating thorn boundary...Success -> active implementation boundary
Activating thorn CartGrid3D...Success -> active implementation grid
Activating thorn cfdbase...Success -> active implementation cfdbase
Activating thorn CFDConvec...Success -> active implementation cfdconvec
Activating thorn CFDDiffuse...Success -> active implementation cfddiffuse
Activating thorn cfdevolvers...Success -> active implementation cfdevolver
Activating thorn CoordBase...Success -> active implementation CoordBase
Activating thorn ellbase...Success -> active implementation ellbase
Activating thorn httpd...Success -> active implementation HTTPD
Activating thorn httpdextra...Success -> active implementation http_utils
Activating thorn inflow...Success -> active implementation CFDInflow
Activating thorn ioascii...Success -> active implementation IOASCII
Activating thorn iobasic...Success -> active implementation IOBasic
Activating thorn iojpeg...Success -> active implementation IOJpeg
Activating thorn ioutil...Success -> active implementation IO
Activating thorn localreduce...Success -> active implementation LocalReduce
Activating thorn pressurepoisson...Success -> active implementation
pressurepoisson
Activating thorn pugh...Success -> active implementation Driver
Activating thorn pughreduce...Success -> active implementation Reduce
Activating thorn pughslab...Success -> active implementation Hyperslab
Activating thorn socket...Success -> active implementation Socket
Activating thorn SymBase...Success -> active implementation SymBase
Activating thorn time...Success -> active implementation time
WARNING[L1,P0] (Cactus): Major error in parameter file
'./arrangements/CFDExamples/AlphaCFD/par/InflowAlphaCCT.par' line 27:
Parameter 'cfdevolve::AbsTol' is not associated with an active thorn
WARNING[L1,P0] (Cactus): Major error in parameter file
'./arrangements/CFDExamples/AlphaCFD/par/InflowAlphaCCT.par' line 28:
Parameter 'cfdevolve::RelTol' is not associated with an active thorn
WARNING[L1,P0] (Cactus): Major error in parameter file
'./arrangements/CFDExamples/AlphaCFD/par/InflowAlphaCCT.par' line 43:
Parameter 'IOHDF5::out_every' is not associated with an active thorn
WARNING[L1,P0] (Cactus): Major error in parameter file
'./arrangements/CFDExamples/AlphaCFD/par/InflowAlphaCCT.par' line 45:
Parameter 'IOHDF5::out_vars' is not associated with an active thorn
WARNING[L1,P0] (Cactus): Major error in parameter file
'./arrangements/CFDExamples/AlphaCFD/par/InflowAlphaCCT.par' line 46:
Parameter 'IOHDF5::checkpoint' is not associated with an active thorn
WARNING level 0 in thorn Cactus processor 0 host cse24.cse.shirazu.ac.ir
  (line 191 of /root/CFDToolkit/Cactus/configs/test1/build/Cactus/main/ProcessParameterDatabase.c):
  -> CCTKi_SetParameterSetMask: 5 major errors in parameter file
WARNING level 0 in thorn Cactus processor 0 host cse24.cse.shirazu.ac.ir
  (line 191 of /root/CFDToolkit/Cactus/configs/test1/build/Cactus/main/ProcessParameterDatabase.c):
  -> CCTKi_SetParameterSetMask: 5 major errors in parameter file

---------------------------------------Thorns---------------------------------------------------------
CactusBase/Boundary                # boundary ( ) [ ] { }
CactusBase/CartGrid3D              # grid (coordbase) [ ] {driver}
CactusBase/CoordBase               # CoordBase ( ) [ ] { }
CactusBase/IOASCII                 # IOASCII ( ) [ ] {IO}
CactusBase/IOBasic                 # IOBasic (IO) [ ] {IO}
CactusBase/IOUtil                  # IO ( ) [ ] { }
CactusBase/LocalInterp             # LocalInterp ( ) [ ] { }
CactusBase/LocalReduce             # LocalReduce ( ) [ ] { }
CactusBase/SymBase                 # SymBase ( ) [ ] { }
CactusBase/Time                    # time ( ) [ ] {cactus}
CactusConnect/HTTPD
CactusConnect/HTTPDExtra
CactusConnect/Socket
CactusCFD/CFDBase                  # cfdbase (grid) [ ] { }
CactusCFD/CFDConvec                # cfdconvec (cfdbase) [ ] { }
CactusCFD/CFDDiffuse               # cfddiffuse (cfdbase) [ ] { }
CactusCFD/CFDDrivers               # CFDDriver ( ) [ ] { }
CactusCFD/CFDEvolvers              # cfdevolver
(cfdbase,grid,ellbase,cfddiffuse,cfdconvec) [ ] { }
CactusCFD/DrivenCavity             # CFDProblem (cfdbase,cfdevolver) [ ] { }
CactusCFD/PressurePoisson          # pressurepoisson
(ellbase,boundary) [ ] {ellbase}
CactusElliptic/EllBase             # ellbase ( ) [ ] { }
CactusPUGH/PUGH                    # Driver ( ) [ ] {cactus}
CactusPUGH/PUGHInterp              # Interp ( ) [ ] { }
CactusPUGH/PUGHReduce              # Reduce ( ) [ ] { }
CactusPUGH/PUGHSlab                # Hyperslab ( ) [ ] { }
CactusIO/IOJpeg
CactusExternal/jpeg6b
CactusExamples/FleshInfo
#IDWaveMoL
#CactusExamples/SampleBoundary
CactusExamples/TimerInfo
#WaveToy1DF77
#CactusExamples/DemoInterp
CactusExamples/HelloWorld
CactusExamples/SampleIO
#WaveMoL    WaveToy2DF77
CFDExamples/AlphaCFD
CFDExamples/CFDbox
CFDExamples/Inflow
#CFDExamples/InflowCFD



-- 
Best Regards,
S.Mehdi Sheikhalishahi,
Bye.

From mehdi.alishahi at gmail.com  Wed Jan 10 08:42:21 2007
From: mehdi.alishahi at gmail.com (Mehdi Sheikhalishahi)
Date: Wed, 10 Jan 2007 18:12:21 +0330
Subject: [Users] What is the relationship betwwen Cactus and Globus?
Message-ID: <8c911f390701100642j6ee557cfw39bfc06ebe749338@mail.gmail.com>

Hi,
 What is the relationship between Cactus and Globus?
 Does Cactus support Globus 4?

-- 
Best Regards,
S.Mehdi Sheikhalishahi,
Bye.

From yye00 at cct.lsu.edu  Wed Jan 10 10:51:29 2007
From: yye00 at cct.lsu.edu (Yaakoub El-Khamra)
Date: Wed, 10 Jan 2007 10:51:29 -0600
Subject: [Users] [Cfd] How to run CFDExamples samples
In-Reply-To: <8c911f390701092240u1a7cbb1dn4ba57773545a7917@mail.gmail.com>
References: <8c911f390701092240u1a7cbb1dn4ba57773545a7917@mail.gmail.com>
Message-ID: <1168447889.4596.9.camel@fmws01.cct.lsu.edu>



Hi Mehdi
Your parameter file is incompatible with your thornlist, for example are
specifying parameters for IOHDF5 without having the thorn in your
thornlist. The same thing seems to be happening with other thorns. Can
you provide the parameter file you are running your configuration with?

Yaakoub

On Wed, 2007-01-10 at 10:10 +0330, Mehdi Sheikhalishahi wrote:
> Hi,
>  I compile/build Cactus with the following thorns successfully. Now I
> want to test Inflow thorn but I got the following errors:
> # ./exe/cactus_test1 ./arrangements/CFDExamples/AlphaCFD/par/InflowAlphaCCT.par
> --------------------------------------------------------------------------------
> 
>        10
>   1   0101       ************************
>   01  1010 10      The Cactus Code V4.0
>  1010 1101 011      www.cactuscode.org
>   1001 100101    ************************
>     00010101
>      100011     (c) Copyright The Authors
>       0100      GNU Licensed. No Warranty
>       0101
> 
> --------------------------------------------------------------------------------
> 
> Cactus version:    4.0.b16
> Compile date:      Jan 05 2007 (09:19:08)
> Run date:          Jan 05 2007 (22:27:37+0330)
> Run host:          cse24
> Working directory: /root/CFDToolkit/Cactus
> Executable:        ./exe/cactus_test1
> Parameter file:    ./arrangements/CFDExamples/AlphaCFD/par/InflowAlphaCCT.par
> --------------------------------------------------------------------------------
> 
> Activating thorn Cactus...Success -> active implementation Cactus
> Activation requested for
> --->pressurepoisson cfdevolvers localreduce time boundary pugh
> pughreduce pughslab CartGrid3D CoordBase SymBase ioutil ioascii
> iobasic cfdbase ellbase inflow httpd httpdextra socket iojpeg alphaCFD
> CFDConvec CFDDiffuse<---
> Activating thorn alphaCFD...Success -> active implementation alphacct
> Activating thorn boundary...Success -> active implementation boundary
> Activating thorn CartGrid3D...Success -> active implementation grid
> Activating thorn cfdbase...Success -> active implementation cfdbase
> Activating thorn CFDConvec...Success -> active implementation cfdconvec
> Activating thorn CFDDiffuse...Success -> active implementation cfddiffuse
> Activating thorn cfdevolvers...Success -> active implementation cfdevolver
> Activating thorn CoordBase...Success -> active implementation CoordBase
> Activating thorn ellbase...Success -> active implementation ellbase
> Activating thorn httpd...Success -> active implementation HTTPD
> Activating thorn httpdextra...Success -> active implementation http_utils
> Activating thorn inflow...Success -> active implementation CFDInflow
> Activating thorn ioascii...Success -> active implementation IOASCII
> Activating thorn iobasic...Success -> active implementation IOBasic
> Activating thorn iojpeg...Success -> active implementation IOJpeg
> Activating thorn ioutil...Success -> active implementation IO
> Activating thorn localreduce...Success -> active implementation LocalReduce
> Activating thorn pressurepoisson...Success -> active implementation
> pressurepoisson
> Activating thorn pugh...Success -> active implementation Driver
> Activating thorn pughreduce...Success -> active implementation Reduce
> Activating thorn pughslab...Success -> active implementation Hyperslab
> Activating thorn socket...Success -> active implementation Socket
> Activating thorn SymBase...Success -> active implementation SymBase
> Activating thorn time...Success -> active implementation time
> WARNING[L1,P0] (Cactus): Major error in parameter file
> './arrangements/CFDExamples/AlphaCFD/par/InflowAlphaCCT.par' line 27:
> Parameter 'cfdevolve::AbsTol' is not associated with an active thorn
> WARNING[L1,P0] (Cactus): Major error in parameter file
> './arrangements/CFDExamples/AlphaCFD/par/InflowAlphaCCT.par' line 28:
> Parameter 'cfdevolve::RelTol' is not associated with an active thorn
> WARNING[L1,P0] (Cactus): Major error in parameter file
> './arrangements/CFDExamples/AlphaCFD/par/InflowAlphaCCT.par' line 43:
> Parameter 'IOHDF5::out_every' is not associated with an active thorn
> WARNING[L1,P0] (Cactus): Major error in parameter file
> './arrangements/CFDExamples/AlphaCFD/par/InflowAlphaCCT.par' line 45:
> Parameter 'IOHDF5::out_vars' is not associated with an active thorn
> WARNING[L1,P0] (Cactus): Major error in parameter file
> './arrangements/CFDExamples/AlphaCFD/par/InflowAlphaCCT.par' line 46:
> Parameter 'IOHDF5::checkpoint' is not associated with an active thorn
> WARNING level 0 in thorn Cactus processor 0 host cse24.cse.shirazu.ac.ir
>   (line 191 of /root/CFDToolkit/Cactus/configs/test1/build/Cactus/main/ProcessParameterDatabase.c):
>   -> CCTKi_SetParameterSetMask: 5 major errors in parameter file
> WARNING level 0 in thorn Cactus processor 0 host cse24.cse.shirazu.ac.ir
>   (line 191 of /root/CFDToolkit/Cactus/configs/test1/build/Cactus/main/ProcessParameterDatabase.c):
>   -> CCTKi_SetParameterSetMask: 5 major errors in parameter file
> 
> ---------------------------------------Thorns---------------------------------------------------------
> CactusBase/Boundary                # boundary ( ) [ ] { }
> CactusBase/CartGrid3D              # grid (coordbase) [ ] {driver}
> CactusBase/CoordBase               # CoordBase ( ) [ ] { }
> CactusBase/IOASCII                 # IOASCII ( ) [ ] {IO}
> CactusBase/IOBasic                 # IOBasic (IO) [ ] {IO}
> CactusBase/IOUtil                  # IO ( ) [ ] { }
> CactusBase/LocalInterp             # LocalInterp ( ) [ ] { }
> CactusBase/LocalReduce             # LocalReduce ( ) [ ] { }
> CactusBase/SymBase                 # SymBase ( ) [ ] { }
> CactusBase/Time                    # time ( ) [ ] {cactus}
> CactusConnect/HTTPD
> CactusConnect/HTTPDExtra
> CactusConnect/Socket
> CactusCFD/CFDBase                  # cfdbase (grid) [ ] { }
> CactusCFD/CFDConvec                # cfdconvec (cfdbase) [ ] { }
> CactusCFD/CFDDiffuse               # cfddiffuse (cfdbase) [ ] { }
> CactusCFD/CFDDrivers               # CFDDriver ( ) [ ] { }
> CactusCFD/CFDEvolvers              # cfdevolver
> (cfdbase,grid,ellbase,cfddiffuse,cfdconvec) [ ] { }
> CactusCFD/DrivenCavity             # CFDProblem (cfdbase,cfdevolver) [ ] { }
> CactusCFD/PressurePoisson          # pressurepoisson
> (ellbase,boundary) [ ] {ellbase}
> CactusElliptic/EllBase             # ellbase ( ) [ ] { }
> CactusPUGH/PUGH                    # Driver ( ) [ ] {cactus}
> CactusPUGH/PUGHInterp              # Interp ( ) [ ] { }
> CactusPUGH/PUGHReduce              # Reduce ( ) [ ] { }
> CactusPUGH/PUGHSlab                # Hyperslab ( ) [ ] { }
> CactusIO/IOJpeg
> CactusExternal/jpeg6b
> CactusExamples/FleshInfo
> #IDWaveMoL
> #CactusExamples/SampleBoundary
> CactusExamples/TimerInfo
> #WaveToy1DF77
> #CactusExamples/DemoInterp
> CactusExamples/HelloWorld
> CactusExamples/SampleIO
> #WaveMoL    WaveToy2DF77
> CFDExamples/AlphaCFD
> CFDExamples/CFDbox
> CFDExamples/Inflow
> #CFDExamples/InflowCFD
> 
> 
> 


From yye00 at cct.lsu.edu  Wed Jan 10 11:21:03 2007
From: yye00 at cct.lsu.edu (Yaakoub El-Khamra)
Date: Wed, 10 Jan 2007 11:21:03 -0600
Subject: [Users] [Cfd] How to run CFDExamples samples
In-Reply-To: <1168447889.4596.9.camel@fmws01.cct.lsu.edu>
References: <8c911f390701092240u1a7cbb1dn4ba57773545a7917@mail.gmail.com>
	<1168447889.4596.9.camel@fmws01.cct.lsu.edu>
Message-ID: <1168449663.6820.8.camel@fmws01.cct.lsu.edu>


David pointed it out to me that you are using the InflowAlphaCCT.par
parameter file. This parameter file requires a different thornlist than
the one you currently have in your configuration. To start however, I
would recommend you compile a configuration with the thornlist I gave
you and run it with the sample parameter file in DrivenCavity. That is
the basic example of the CFDToolkit. I will update the thornlists and
sample parameter files on the CFDToolkit website so you will be able to
get the new ones from there.


Cheers
Yaakoub

On Wed, 2007-01-10 at 10:51 -0600, Yaakoub El-Khamra wrote:
> 
> Hi Mehdi
> Your parameter file is incompatible with your thornlist, for example are
> specifying parameters for IOHDF5 without having the thorn in your
> thornlist. The same thing seems to be happening with other thorns. Can
> you provide the parameter file you are running your configuration with?
> 
> Yaakoub
> 
> On Wed, 2007-01-10 at 10:10 +0330, Mehdi Sheikhalishahi wrote:
> > Hi,
> >  I compile/build Cactus with the following thorns successfully. Now I
> > want to test Inflow thorn but I got the following errors:
> > # ./exe/cactus_test1 ./arrangements/CFDExamples/AlphaCFD/par/InflowAlphaCCT.par
> > --------------------------------------------------------------------------------
> > 
> >        10
> >   1   0101       ************************
> >   01  1010 10      The Cactus Code V4.0
> >  1010 1101 011      www.cactuscode.org
> >   1001 100101    ************************
> >     00010101
> >      100011     (c) Copyright The Authors
> >       0100      GNU Licensed. No Warranty
> >       0101
> > 
> > --------------------------------------------------------------------------------
> > 
> > Cactus version:    4.0.b16
> > Compile date:      Jan 05 2007 (09:19:08)
> > Run date:          Jan 05 2007 (22:27:37+0330)
> > Run host:          cse24
> > Working directory: /root/CFDToolkit/Cactus
> > Executable:        ./exe/cactus_test1
> > Parameter file:    ./arrangements/CFDExamples/AlphaCFD/par/InflowAlphaCCT.par
> > --------------------------------------------------------------------------------
> > 
> > Activating thorn Cactus...Success -> active implementation Cactus
> > Activation requested for
> > --->pressurepoisson cfdevolvers localreduce time boundary pugh
> > pughreduce pughslab CartGrid3D CoordBase SymBase ioutil ioascii
> > iobasic cfdbase ellbase inflow httpd httpdextra socket iojpeg alphaCFD
> > CFDConvec CFDDiffuse<---
> > Activating thorn alphaCFD...Success -> active implementation alphacct
> > Activating thorn boundary...Success -> active implementation boundary
> > Activating thorn CartGrid3D...Success -> active implementation grid
> > Activating thorn cfdbase...Success -> active implementation cfdbase
> > Activating thorn CFDConvec...Success -> active implementation cfdconvec
> > Activating thorn CFDDiffuse...Success -> active implementation cfddiffuse
> > Activating thorn cfdevolvers...Success -> active implementation cfdevolver
> > Activating thorn CoordBase...Success -> active implementation CoordBase
> > Activating thorn ellbase...Success -> active implementation ellbase
> > Activating thorn httpd...Success -> active implementation HTTPD
> > Activating thorn httpdextra...Success -> active implementation http_utils
> > Activating thorn inflow...Success -> active implementation CFDInflow
> > Activating thorn ioascii...Success -> active implementation IOASCII
> > Activating thorn iobasic...Success -> active implementation IOBasic
> > Activating thorn iojpeg...Success -> active implementation IOJpeg
> > Activating thorn ioutil...Success -> active implementation IO
> > Activating thorn localreduce...Success -> active implementation LocalReduce
> > Activating thorn pressurepoisson...Success -> active implementation
> > pressurepoisson
> > Activating thorn pugh...Success -> active implementation Driver
> > Activating thorn pughreduce...Success -> active implementation Reduce
> > Activating thorn pughslab...Success -> active implementation Hyperslab
> > Activating thorn socket...Success -> active implementation Socket
> > Activating thorn SymBase...Success -> active implementation SymBase
> > Activating thorn time...Success -> active implementation time
> > WARNING[L1,P0] (Cactus): Major error in parameter file
> > './arrangements/CFDExamples/AlphaCFD/par/InflowAlphaCCT.par' line 27:
> > Parameter 'cfdevolve::AbsTol' is not associated with an active thorn
> > WARNING[L1,P0] (Cactus): Major error in parameter file
> > './arrangements/CFDExamples/AlphaCFD/par/InflowAlphaCCT.par' line 28:
> > Parameter 'cfdevolve::RelTol' is not associated with an active thorn
> > WARNING[L1,P0] (Cactus): Major error in parameter file
> > './arrangements/CFDExamples/AlphaCFD/par/InflowAlphaCCT.par' line 43:
> > Parameter 'IOHDF5::out_every' is not associated with an active thorn
> > WARNING[L1,P0] (Cactus): Major error in parameter file
> > './arrangements/CFDExamples/AlphaCFD/par/InflowAlphaCCT.par' line 45:
> > Parameter 'IOHDF5::out_vars' is not associated with an active thorn
> > WARNING[L1,P0] (Cactus): Major error in parameter file
> > './arrangements/CFDExamples/AlphaCFD/par/InflowAlphaCCT.par' line 46:
> > Parameter 'IOHDF5::checkpoint' is not associated with an active thorn
> > WARNING level 0 in thorn Cactus processor 0 host cse24.cse.shirazu.ac.ir
> >   (line 191 of /root/CFDToolkit/Cactus/configs/test1/build/Cactus/main/ProcessParameterDatabase.c):
> >   -> CCTKi_SetParameterSetMask: 5 major errors in parameter file
> > WARNING level 0 in thorn Cactus processor 0 host cse24.cse.shirazu.ac.ir
> >   (line 191 of /root/CFDToolkit/Cactus/configs/test1/build/Cactus/main/ProcessParameterDatabase.c):
> >   -> CCTKi_SetParameterSetMask: 5 major errors in parameter file
> > 
> > ---------------------------------------Thorns---------------------------------------------------------
> > CactusBase/Boundary                # boundary ( ) [ ] { }
> > CactusBase/CartGrid3D              # grid (coordbase) [ ] {driver}
> > CactusBase/CoordBase               # CoordBase ( ) [ ] { }
> > CactusBase/IOASCII                 # IOASCII ( ) [ ] {IO}
> > CactusBase/IOBasic                 # IOBasic (IO) [ ] {IO}
> > CactusBase/IOUtil                  # IO ( ) [ ] { }
> > CactusBase/LocalInterp             # LocalInterp ( ) [ ] { }
> > CactusBase/LocalReduce             # LocalReduce ( ) [ ] { }
> > CactusBase/SymBase                 # SymBase ( ) [ ] { }
> > CactusBase/Time                    # time ( ) [ ] {cactus}
> > CactusConnect/HTTPD
> > CactusConnect/HTTPDExtra
> > CactusConnect/Socket
> > CactusCFD/CFDBase                  # cfdbase (grid) [ ] { }
> > CactusCFD/CFDConvec                # cfdconvec (cfdbase) [ ] { }
> > CactusCFD/CFDDiffuse               # cfddiffuse (cfdbase) [ ] { }
> > CactusCFD/CFDDrivers               # CFDDriver ( ) [ ] { }
> > CactusCFD/CFDEvolvers              # cfdevolver
> > (cfdbase,grid,ellbase,cfddiffuse,cfdconvec) [ ] { }
> > CactusCFD/DrivenCavity             # CFDProblem (cfdbase,cfdevolver) [ ] { }
> > CactusCFD/PressurePoisson          # pressurepoisson
> > (ellbase,boundary) [ ] {ellbase}
> > CactusElliptic/EllBase             # ellbase ( ) [ ] { }
> > CactusPUGH/PUGH                    # Driver ( ) [ ] {cactus}
> > CactusPUGH/PUGHInterp              # Interp ( ) [ ] { }
> > CactusPUGH/PUGHReduce              # Reduce ( ) [ ] { }
> > CactusPUGH/PUGHSlab                # Hyperslab ( ) [ ] { }
> > CactusIO/IOJpeg
> > CactusExternal/jpeg6b
> > CactusExamples/FleshInfo
> > #IDWaveMoL
> > #CactusExamples/SampleBoundary
> > CactusExamples/TimerInfo
> > #WaveToy1DF77
> > #CactusExamples/DemoInterp
> > CactusExamples/HelloWorld
> > CactusExamples/SampleIO
> > #WaveMoL    WaveToy2DF77
> > CFDExamples/AlphaCFD
> > CFDExamples/CFDbox
> > CFDExamples/Inflow
> > #CFDExamples/InflowCFD
> > 
> > 
> > 
> 
> _______________________________________________
> Users mailing list
> Users at cactuscode.org
> http://www.cactuscode.org/mailman/listinfo/users
> 


From schnetter at cct.lsu.edu  Fri Jan 12 10:58:03 2007
From: schnetter at cct.lsu.edu (Erik Schnetter)
Date: Fri, 12 Jan 2007 10:58:03 -0600
Subject: [Users] What is the relationship betwwen Cactus and Globus?
In-Reply-To: <8c911f390701100642j6ee557cfw39bfc06ebe749338@mail.gmail.com>
References: <8c911f390701100642j6ee557cfw39bfc06ebe749338@mail.gmail.com>
Message-ID: <CD8FF92E-F524-4CE2-84A4-AC2B83954672@cct.lsu.edu>

On Jan 10, 2007, at 08:42:21, Mehdi Sheikhalishahi wrote:

> Hi,
>  What is the relationship between Cactus and Globus?
>  Does Cactus support Globus 4?

Cactus uses MPI to run on parallel machines.  You can use a Globus- 
aware MPI library when you build Cactus, or you can use Globus to  
start a Cactus application.  The flesh (core) of Cactus is  
independent of Globus, but there may be thorns which use Globus to  
implement additional features.

-erik

-- 
Erik Schnetter <schnetter at cct.lsu.edu>

My email is as private as my paper mail.  I therefore support encrypting
and signing email messages.  Get my PGP key from www.keyserver.net.



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From baiotti at aei.mpg.de  Tue Jan 16 04:21:01 2007
From: baiotti at aei.mpg.de (Luca Baiotti)
Date: Tue, 16 Jan 2007 11:21:01 +0100
Subject: [Users] peyote node names
Message-ID: <45ACA70D.2070108@aei.mpg.de>

Hi,

I may have missed something in my long absence: how are the peyote nodes 
called nowadays?

I find that some lower-number nodes can be ssh-accessed with the name 
node???? (while once they could be accessed also by ic????).

Higher-number nodes cannot be ssh-accessed with any of the above names:

LB-peyoteC ~ > ssh node0168
ssh: node0168: Name or service not known
LB-peyoteC ~ > ssh ic0168
ssh: connect to host ic0168 port 22: No route to host



What has happened?


Luca.


From baiotti at aei.mpg.de  Tue Jan 16 04:48:16 2007
From: baiotti at aei.mpg.de (Luca Baiotti)
Date: Tue, 16 Jan 2007 11:48:16 +0100
Subject: [Users] peyote node names
In-Reply-To: <45ACA70D.2070108@aei.mpg.de>
References: <45ACA70D.2070108@aei.mpg.de>
Message-ID: <45ACAD70.8060206@aei.mpg.de>

Sorry, it was the wrong mailing list!

Luca.



Luca Baiotti wrote:
> Hi,
> 
> I may have missed something in my long absence: how are the peyote nodes 
> called nowadays?
> 
> I find that some lower-number nodes can be ssh-accessed with the name 
> node???? (while once they could be accessed also by ic????).
> 
> Higher-number nodes cannot be ssh-accessed with any of the above names:
> 
> LB-peyoteC ~ > ssh node0168
> ssh: node0168: Name or service not known
> LB-peyoteC ~ > ssh ic0168
> ssh: connect to host ic0168 port 22: No route to host
> 
> 
> 
> What has happened?
> 
> 
> Luca.
> 
> _______________________________________________
> Users mailing list
> Users at cactuscode.org
> http://www.cactuscode.org/mailman/listinfo/users


From ryoji at cct.lsu.edu  Tue Jan 16 16:48:13 2007
From: ryoji at cct.lsu.edu (Ryoji Takahashi)
Date: Tue, 16 Jan 2007 16:48:13 -0600
Subject: [Users] HPMPI
Message-ID: <45AD562D.2050301@cct.lsu.edu>

Hi, i never compile with hpmpi.

with following configure file

MPI=CUSTOM
MPI_LIBS= mpi
MPI_LIB_DIRS=/opt/hpmpi/lib/linux_amd64
MPI_INC_DIRS=/opt/hpmpi/include
PTHREADS=yes

i am getting the following link error.

/global/malcubi/ryoji/Cactus/configs/x86_64/lib/libthorn_Cactus.a(CactusDefaultComm.c.o)(.text+0x69a): 
In function `CactusDefaultMyProc':
: undefined reference to `MPI_Comm_rank'
/global/malcubi/ryoji/Cactus/configs/x86_64/lib/libthorn_Cactus.a(CactusDefaultComm.c.o)(.text+0x6c7): 
In function `CactusDefaultMyProc':
: undefined reference to `MPI_Error_string'
/global/malcubi/ryoji/Cactus/configs/x86_64/lib/libthorn_CarpetInterp.a(interp.cc.o)(.text+0x879): 
In function `Carpet_DriverInterpolate':
: undefined reference to `hpmp_int'

etc.

how i can solve this problem.
so far, HPMPI is only available in here.
thanks.

ryoji

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From schnetter at cct.lsu.edu  Tue Jan 16 17:29:02 2007
From: schnetter at cct.lsu.edu (Erik Schnetter)
Date: Tue, 16 Jan 2007 17:29:02 -0600
Subject: [Users] HPMPI
In-Reply-To: <45AD562D.2050301@cct.lsu.edu>
References: <45AD562D.2050301@cct.lsu.edu>
Message-ID: <FEED380C-1153-4DFB-83D2-823C83DF2BEC@cct.lsu.edu>

On Jan 16, 2007, at 16:48:13, Ryoji Takahashi wrote:

> Hi, i never compile with hpmpi.
>
> with following configure file
>
> MPI=CUSTOM
> MPI_LIBS= mpi
> MPI_LIB_DIRS=/opt/hpmpi/lib/linux_amd64
> MPI_INC_DIRS=/opt/hpmpi/include
> PTHREADS=yes
>
> i am getting the following link error.
>
> /global/malcubi/ryoji/Cactus/configs/x86_64/lib/libthorn_Cactus.a 
> (CactusDefaultComm.c.o)(.text+0x69a): In function  
> `CactusDefaultMyProc':
> : undefined reference to `MPI_Comm_rank'
> /global/malcubi/ryoji/Cactus/configs/x86_64/lib/libthorn_Cactus.a 
> (CactusDefaultComm.c.o)(.text+0x6c7): In function  
> `CactusDefaultMyProc':
> : undefined reference to `MPI_Error_string'
> /global/malcubi/ryoji/Cactus/configs/x86_64/lib/ 
> libthorn_CarpetInterp.a(interp.cc.o)(.text+0x879): In function  
> `Carpet_DriverInterpolate':
> : undefined reference to `hpmp_int'

You probably need to list more libraries in "MPI_LIBS", not just  
"mpi".  Look into the directory "/opt/hpmpi/lib/linux_amd64", and  
list some of the other libraries that are there (if there are more).   
The order in which you list the libraries is also important -- you  
may have to try some permutations.

-erik

-- 
Erik Schnetter <schnetter at cct.lsu.edu>

My email is as private as my paper mail.  I therefore support encrypting
and signing email messages.  Get my PGP key from www.keyserver.net.



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From ryoji at cct.lsu.edu  Tue Jan 16 18:24:21 2007
From: ryoji at cct.lsu.edu (Ryoji Takahashi)
Date: Tue, 16 Jan 2007 18:24:21 -0600
Subject: [Users] HPMPI
In-Reply-To: <FEED380C-1153-4DFB-83D2-823C83DF2BEC@cct.lsu.edu>
References: <45AD562D.2050301@cct.lsu.edu>
	<FEED380C-1153-4DFB-83D2-823C83DF2BEC@cct.lsu.edu>
Message-ID: <45AD6CB5.5020107@cct.lsu.edu>

thanks.
it seems i just missed some link
that was all.

ryoji.


Erik Schnetter wrote:

> On Jan 16, 2007, at 16:48:13, Ryoji Takahashi wrote:
>
>> Hi, i never compile with hpmpi.
>>
>> with following configure file
>>
>> MPI=CUSTOM
>> MPI_LIBS= mpi
>> MPI_LIB_DIRS=/opt/hpmpi/lib/linux_amd64
>> MPI_INC_DIRS=/opt/hpmpi/include
>> PTHREADS=yes
>>
>> i am getting the following link error.
>>
>> /global/malcubi/ryoji/Cactus/configs/x86_64/lib/libthorn_Cactus.a 
>> (CactusDefaultComm.c.o)(.text+0x69a): In function  
>> `CactusDefaultMyProc':
>> : undefined reference to `MPI_Comm_rank'
>> /global/malcubi/ryoji/Cactus/configs/x86_64/lib/libthorn_Cactus.a 
>> (CactusDefaultComm.c.o)(.text+0x6c7): In function  
>> `CactusDefaultMyProc':
>> : undefined reference to `MPI_Error_string'
>> /global/malcubi/ryoji/Cactus/configs/x86_64/lib/ 
>> libthorn_CarpetInterp.a(interp.cc.o)(.text+0x879): In function  
>> `Carpet_DriverInterpolate':
>> : undefined reference to `hpmp_int'
>
>
> You probably need to list more libraries in "MPI_LIBS", not just  
> "mpi".  Look into the directory "/opt/hpmpi/lib/linux_amd64", and  
> list some of the other libraries that are there (if there are more).   
> The order in which you list the libraries is also important -- you  
> may have to try some permutations.
>
> -erik
>
>------------------------------------------------------------------------
>
>_______________________________________________
>Users mailing list
>Users at cactuscode.org
>http://www.cactuscode.org/mailman/listinfo/users
>  
>

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From a.garciagutierrez at iu-bremen.de  Thu Jan 18 07:53:28 2007
From: a.garciagutierrez at iu-bremen.de (Angelica Garcia)
Date: Thu, 18 Jan 2007 14:53:28 +0100
Subject: [Users] installation on ubuntu system
In-Reply-To: <200701181438.35068.a.garciagutierrez@iu-bremen.de>
References: <200701181438.35068.a.garciagutierrez@iu-bremen.de>
Message-ID: <200701181453.28005.a.garciagutierrez@iu-bremen.de>

 Hello,
 Does anyone know if cactus can be installed on ubuntu systems?

Thanks in advanced,
Angelica.

From szilagyi at aei.mpg.de  Thu Jan 18 08:03:52 2007
From: szilagyi at aei.mpg.de (Bela Szilagyi)
Date: Thu, 18 Jan 2007 15:03:52 +0100
Subject: [Users] installation on ubuntu system
In-Reply-To: <200701181453.28005.a.garciagutierrez@iu-bremen.de>
References: <200701181438.35068.a.garciagutierrez@iu-bremen.de>
	<200701181453.28005.a.garciagutierrez@iu-bremen.de>
Message-ID: <200701181503.52438.szilagyi@aei.mpg.de>

I am using it on ubuntu.  And had no difficulties.  Although I copied over my 
home directory (including the cactus tree) from a previous laptop that had  
suse.



On Thursday 18 January 2007 14:53, Angelica Garcia wrote:
>  Hello,
>  Does anyone know if cactus can be installed on ubuntu systems?
>
> Thanks in advanced,
> Angelica.
> _______________________________________________
> Users mailing list
> Users at cactuscode.org
> http://www.cactuscode.org/mailman/listinfo/users

-- 
Bela Szilagyi

Max-Planck-Institut f?r Gravitationsphysik
Albert-Einstein-Institut
Tel: +49 331 567 7632
Fax: +49 331 567 7649



From koppitz at aei.mpg.de  Thu Jan 18 12:57:26 2007
From: koppitz at aei.mpg.de (Michael Koppitz)
Date: Thu, 18 Jan 2007 19:57:26 +0100 (CET)
Subject: [Users] installation on ubuntu system
In-Reply-To: <200701181453.28005.a.garciagutierrez@iu-bremen.de>
References: <200701181438.35068.a.garciagutierrez@iu-bremen.de>
	<200701181453.28005.a.garciagutierrez@iu-bremen.de>
Message-ID: <Pine.LNX.4.60.0701181954550.2725@sshserv.aei.mpg.de>


yes,
I have it running on a (current) kubuntu version
Linux  2.6.15-27-386


good luck trying ...

Michael

On Thu, 18 Jan 2007, Angelica Garcia wrote:

> Hello,
> Does anyone know if cactus can be installed on ubuntu systems?
>
> Thanks in advanced,
> Angelica.
> _______________________________________________
> Users mailing list
> Users at cactuscode.org
> http://www.cactuscode.org/mailman/listinfo/users
>
>


From P.L.vanMarion at tudelft.nl  Tue Jan 30 02:23:50 2007
From: P.L.vanMarion at tudelft.nl (Peter van Marion - LR)
Date: Tue, 30 Jan 2007 09:23:50 +0100
Subject: [Users] running CFD toolkit in Cactus on a IBM Bluegene/L computer
Message-ID: <E4F1837D2DEA00488BAE1C9E5B31D83C06958A@SRV503.tudelft.net>


Dear all,

I am currently involved in a project at Delft University of Technology called superbus, this is a high speed vehicle for public transport. In order for this vehicle to drive at this high speed an efficient aerodynamic shape is needed. The right shape for this is to be found by CFD and wind tunnel testing. 

For our CFD calculations we are able to use a IBM Bluegene/L computer. The problem here is that we have not been able to get hold of the right software to run any CFD simulations on this computer. Apparantely there is software available at the established commercial CFD software companies, but they cannot have any (license) control over it so they do not want to support this platform. So I searched the internet and found the www.CactusCode.org website, which has (on first inspection) the capability to run on a Bluegene/L machine and do CFD simulations.

Now my question is: Is there anyone who has run a CFD simulation on a Bluegene/L machine before? Since I am kind of a newby to this cactus code and its thorns, I am also interested in any experiences with the CFD code itself, what can it do and what are its limitations (what turbulence models are in there)? Did anyone do any benchmarks with other (commercial) CFD codes?
Also I would like to know more about how to get the cactus code running on Bluegene/L as well, this will save me a tremendous amount of work (because both the code and the machine are new to me).

Well a lot of questions, hopefully you can help me out with this. Your response is greatly appreciated!

best regards,

Peter
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From yye00 at cct.lsu.edu  Wed Jan 31 13:55:36 2007
From: yye00 at cct.lsu.edu (Yaakoub Y El Khamra)
Date: Wed, 31 Jan 2007 13:55:36 -0600
Subject: [Users] Cactus Mojave
Message-ID: <45C0F438.3000703@cct.lsu.edu>


Greetings
We have recently updated the Cactus Code website and added a section 
about Mojave, the Cactus Code Eclipse interface, complete with screen 
shots of Mojave in action. Eclipse is an integrated development 
environment (IDE, http://www.eclipse.org) that comes complete with 
various plugins and a plethora of community developed plugins including 
a parallel debugger (http://www.eclipse.org/ptp). Please take the time 
to check out Mojave and if you run into problems or have features that 
you want implemented please let us know. The URL is: 
http://www.cactuscode.org/Community/Mojave/


Cheers
Yaakoub